PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E00407.1.p
Common NameEUGRSUZ_E00407, LOC104443670
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 199aa    MW: 22490.4 Da    PI: 7.507
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E00407.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding62.49.3e-201562148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+eEd +l ++++ +G ++WktIa++ g++R++k+c++rw++yl
  Eucgr.E00407.1.p 15 KGAWTAEEDRRLSEYIEVHGAKRWKTIAAKSGLNRCGKSCRLRWLNYL 62
                      79********************************************97 PP

2Myb_DNA-binding52.98.3e-1768113148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+ + eE++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l
  Eucgr.E00407.1.p  68 RGNISDEEEDLILRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 113
                       7899******************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.8981062IPR017930Myb domain
SuperFamilySSF466891.26E-2914109IPR009057Homeodomain-like
SMARTSM007178.0E-161464IPR001005SANT/Myb domain
PfamPF002493.7E-171562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-251669IPR009057Homeodomain-like
CDDcd001672.87E-111762No hitNo description
PROSITE profilePS5129426.50863117IPR017930Myb domain
SMARTSM007174.3E-1667115IPR001005SANT/Myb domain
PfamPF002494.3E-1568113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-2570117IPR009057Homeodomain-like
CDDcd001676.03E-1172113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MAPKSEGTAK KVTNKGAWTA EEDRRLSEYI EVHGAKRWKT IAAKSGLNRC GKSCRLRWLN  60
YLRPNIKRGN ISDEEEDLIL RLHKLLGNRW SLIAGRLPGR TDNEIKNYWN SHLSKKISQK  120
EKPQNKVVPE ASPETSPATP QEVVLPAEEG ADKAVGNFLD VDFDTDEFFD FTAEGSYGLE  180
WVNKFLELDE GLSLKEKM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-311411726128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E00407.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010055477.11e-145PREDICTED: transcription factor MYB114-like
SwissprotQ962763e-54MYB23_ARATH; Transcription factor MYB23
SwissprotP102904e-54MYBC_MAIZE; Anthocyanin regulatory C1 protein
TrEMBLA0A059C1991e-145A0A059C199_EUCGR; Uncharacterized protein
STRINGVIT_00s0341g00050.t018e-91(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14750.13e-55myb domain protein 66